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1.
Parasite Immunol ; 23(5): 237-49, 2001 May.
Artigo em Inglês | MEDLINE | ID: mdl-11309134

RESUMO

Neutrophil inhibitory factor (NIF), a protein isolated from hookworms of the genus Ancylostoma, inhibits CD11b/18-dependent leucocyte function, binding to the I domain of CD11b. Historically, NIF was serendipitously isolated from whole worm extracts during a search for novel antihaemostatic agents, and little is known of its source or biological significance to the parasite. NIF has also been identified as a possible hookworm vaccine candidate. Ancylostoma ceylanicum recombinant NIF, expressed in its active form in Pichia pastoris, was purified and its functional activity confirmed using neutrophil adhesion assays and confirmatory immunoassay. Recombinant NIF was subsequently used in vaccination trials in the A. ceylanicum-hamster model system for human hookworm infection. Vaccinated and challenged animals were not protected in terms of worm burden or haematocrit values, despite the presence of high levels of specific antibody against NIF. However, adult worms resident in vaccinated animals showed a significant reduction in fecundity (85.8% by day 21 postinfection), indicating a degree of protection against subsequent transmission by vaccination. These data indicate that targeted vaccination with recombinant subunit material, derived from a known and effective immune suppressant secreted by the parasite, may offer partial protection against the transmission of hookworm infection. Furthermore, we can also report that a biological activity characteristic of NIF is detectable in the secretions of A. ceylanicum using two complementary bioassays. Complete neutralization of this secreted activity by vaccination in combination with other vaccine candidates may result in improved protection against A. ceylanicum infection.


Assuntos
Ancilostomíase/prevenção & controle , Antígenos de Helmintos/imunologia , Fertilidade/imunologia , Glicoproteínas/imunologia , Proteínas de Helminto/imunologia , Proteínas de Membrana , Ancylostoma/imunologia , Ancilostomíase/imunologia , Ancilostomíase/parasitologia , Animais , Anticorpos Anti-Helmínticos/imunologia , Antígenos de Helmintos/isolamento & purificação , Cricetinae , Modelos Animais de Doenças , Feminino , Glicoproteínas/isolamento & purificação , Proteínas de Helminto/isolamento & purificação , Hematócrito , Humanos , Masculino , Óvulo , Parasitemia , Coelhos , Proteínas Recombinantes/imunologia , Proteínas Recombinantes/isolamento & purificação , Vacinação
2.
Thromb Haemost ; 77(5): 981-5, 1997 May.
Artigo em Inglês | MEDLINE | ID: mdl-9184414

RESUMO

The integrin alpha 2 beta 1 is a major cellular receptor for collagen. The alpha 2 subunit contains an +/- 200 amino acids inserted domain (I-domain) in the N-terminal region. A certain degree of homology exists between the I-domains found in integrins, collagen and the A-domains of vWF. The alpha 2-I-domain encoding region (aa residues D145 to S334) was obtained by RT-PCR from mRNA of non stimulated human PBL's. The primers were designed to introduce the necessary restriction sites for cloning of the DNA fragment in frame downstream of the malE gene, as well as a stop codon after the last triplet. The resulting construct pMAL-c2-alpha 2-I allows the expression of the I-domain, fused to the C-terminus of maltose binding protein (mal). The alpha 2-I-mal is purified from the bacterial extract by affinity chromatography on an amylose column. The purified alpha 2-I-mal has been characterized by ELISA's. The alpha 2-I-mal bound to immobilised collagen type I in a concentration dependent manner and could be blocked by the functional monoclonal anti-alpha 2 beta 1 antibody 6F1. The interaction of alpha 2-I-mal with collagen furthermore is Mg(2+)-dependent since the binding was inhibited in the presence of 10 mM EDTA or 10 mM Ca2+ but sustained in the presence of 10 mM Mg2+. Finally, alpha 2-I-mal itself was able to inhibit adhesion of washed platelets to collagen immobilised on a microtiterplate in a dose-dependent manner (alpha 2-I-mal IC50:0.7 microM) as well as platelet aggregation induced by collagen type I (alpha 2-I-mal IC50:0.7 microM). With these results we could confirm that the alpha 2-I-domain represents the collagen-binding site of alpha 2 beta 1 and we furthermore could indicate that this domain is able to prevent platelet adhesion to collagen and collagen-induced platelet aggregation, pointing to the primordial role of alpha 2-I-mal and hence of alpha 2 beta 1 in platelet-collagen interaction.


Assuntos
Plaquetas/fisiologia , Colágeno/fisiologia , Integrinas/química , Integrinas/fisiologia , Adesividade Plaquetária , Animais , Proteínas de Bactérias/biossíntese , Sequência de Bases , Plaquetas/efeitos dos fármacos , Proteínas de Transporte/biossíntese , Primers do DNA , Humanos , Integrina beta1/fisiologia , Integrinas/biossíntese , Cinética , Linfócitos/imunologia , Proteínas Ligantes de Maltose , Dados de Sequência Molecular , Fragmentos de Peptídeos/farmacologia , Adesividade Plaquetária/efeitos dos fármacos , Reação em Cadeia da Polimerase , RNA Mensageiro/metabolismo , Ratos , Receptores de Colágeno , Proteínas Recombinantes de Fusão/biossíntese , Proteínas Recombinantes de Fusão/farmacologia
3.
Gene ; 173(2): 179-81, 1996 Sep 16.
Artigo em Inglês | MEDLINE | ID: mdl-8964495

RESUMO

We describe a vector, lambdaZLG6, combining the high efficiency of cDNA library cloning in bacteriophage lambda with filamentous phage display of cDNA-encoded products. The cDNAs are expressed as fusions to the 3' end of M13 gene VI. The lambdaZLG library is converted to a pZLG6-cDNA phagemid library by in vivo mass excision. Helper phage infection generates a library of phagemid particles displaying the cDNA-encoded products and containing the corresponding nucleotide sequences within.


Assuntos
Bacteriófago lambda/genética , Clonagem Molecular , Biblioteca Gênica , Vetores Genéticos , Bacteriófago M13/genética , DNA Complementar
4.
Biotechnology (N Y) ; 13(4): 378-82, 1995 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-9634780

RESUMO

We describe a novel phage display system that affords the surface expression and hence affinity selection of cDNAs. The strategy is based on a new approach to functionally display proteins on filamentous phage through the attachment to the C-terminus of the minor coat protein VI. The utility of the method was evaluated using a cDNA library derived from the parasite Ancylostoma caninum. cDNA sequences were fused in each of the three reading frames to the 3'-end of the M13 gene VI expressed by a phagemid vector. Phages rescued from this cDNA expression library were subjected to biopanning against two serine proteases, trypsin and the human coagulation factor Xa. This led to the identification of cDNAs encoding novel members of two different families of serine protease inhibitors. The authenticity of the cDNA selected with trypsin as the target was demonstrated by purifying the encoded potent Kunitz-type inhibitor from an Ancylostoma caninum extract. The rapid isolation of specific cDNAs with the protein VI monovalent display system should facilitate the search for novel biologically important ligands.


Assuntos
Capsídeo/genética , DNA Complementar/genética , Sequência de Aminoácidos , Ancylostoma/enzimologia , Ancylostoma/genética , Animais , Sequência de Bases , Biotinilação , Western Blotting , Fator Xa/metabolismo , Biblioteca Gênica , Vetores Genéticos , Humanos , Dados de Sequência Molecular , Proteínas de Plantas/genética , Serina Endopeptidases/genética , Inibidores de Serina Proteinase/genética , Tripsina/metabolismo , Inibidores da Tripsina , alfa-Amilases/antagonistas & inibidores
5.
Br J Haematol ; 87(3): 562-71, 1994 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-7993797

RESUMO

We describe the production and biochemical characterization of the first GPIIb/IIIa-inhibiting monoclonal antibody that contains an RGD sequence in the CDR3 region of the heavy chain. Monoclonal antibodies obtained by immunizing mice with human platelets were screened using consecutive ELISAs based on human platelets and immuno-affinity-purified glycoprotein (GP) IIb/IIIa coated on microtitre plates. Out of 30 monoclonal antibodies reacting with GPIIb/IIIa, one, MA-16N7C2, potently inhibited platelet aggregation induced by ADP, thrombin, arachidonic acid, collagen, U46619, adrenaline and platelet-activating factor, whereas ristocetin-induced aggregation was unaffected. MA-16N7C2 (IgG2a) bound approximately 4 times faster to activated than to resting platelets, with a Kdcalc of 6.6nM and of 17.5nM, respectively. Equilibrium binding studies to non-activated platelets showed a Kd of 18.2nM with 41 x 10(3) binding sites per platelet. The antibody recognized GPIIb/IIIa only as a Ca(2+)-dependent complex. MA-16N7C2 blocked fibrinogen and von Willebrand factor binding to GPIIb/IIIa in a competitive manner with a Ki of 8.5nM and 13.2nM, respectively. Sequence analysis revealed a RGD-containing sequence with homology to disintegrins, in the CDR3 region of the heavy chain. That this RGD-containing sequence could be involved in the interaction of the antibody to GPIIb/IIIa was finally indicated by showing that the binding is completely and competitively inhibited by echistatin.


Assuntos
Integrinas/metabolismo , Peptídeos , Inibidores da Agregação Plaquetária/metabolismo , Glicoproteínas da Membrana de Plaquetas/antagonistas & inibidores , Venenos de Víboras/metabolismo , Sequência de Aminoácidos , Anticorpos Monoclonais/imunologia , Anticorpos Monoclonais/metabolismo , Sequência de Bases , Sítios de Ligação , Plaquetas/imunologia , Plaquetas/metabolismo , Western Blotting , Humanos , Cadeias Pesadas de Imunoglobulinas/imunologia , Cadeias Pesadas de Imunoglobulinas/metabolismo , Peptídeos e Proteínas de Sinalização Intercelular , Dados de Sequência Molecular , Agregação Plaquetária
6.
J Biol Chem ; 269(13): 10008-15, 1994 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-7908286

RESUMO

The chronic survival of many endoparasites is dependent on the ability of these organisms to escape the host immune response. Identification of the molecular mechanisms by which these organisms evade this response may yield novel approaches in the development of anti-inflammatory agents. We describe here the discovery and characterization of a novel 41-kilodalton glycoprotein from the canine hookwork (Ancylostoma caninum) that potently inhibits CD11/CD18-dependent neutrophil function in vitro. Neutrophil inhibitory factor (NIF) blocks the adhesion of activated human neutrophils to vascular endothelial cells as well as the release of H2O2 from activated neutrophils, over a similar concentration range (IC50 10-20 nM). Studies aimed at determining the nature of the NIF binding site on neutrophils revealed selective, high affinity binding of this protein to the integrin CD11b/CD18. A cDNA encoding NIF was isolated from a canine hookworm cDNA library. NIF comprises a mature polypeptide of 257 amino acids, preceded by a 17-amino acid leader. The mature protein has 10 cysteines and has seven potential N-linked glycosylation sites. NIF has no significant sequence homologies to any previously reported protein. As such, NIF represents a prototype of a novel class of leukocyte function inhibitors.


Assuntos
Ancylostomatoidea/fisiologia , Antígenos CD/metabolismo , Glicoproteínas/isolamento & purificação , Proteínas de Helminto/isolamento & purificação , Antígeno de Macrófago 1/metabolismo , Neutrófilos/fisiologia , Sequência de Aminoácidos , Ancylostomatoidea/metabolismo , Animais , Sequência de Bases , Antígenos CD18 , Clonagem Molecular , Primers do DNA , DNA Complementar , Cães , Glicoproteínas/metabolismo , Glicoproteínas/farmacologia , Proteínas de Helminto/metabolismo , Proteínas de Helminto/farmacologia , Humanos , Leucócitos/efeitos dos fármacos , Leucócitos/fisiologia , Proteínas de Membrana/sangue , Dados de Sequência Molecular , Neutrófilos/efeitos dos fármacos , Neutrófilos/imunologia , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/isolamento & purificação , Reação em Cadeia da Polimerase , Biossíntese de Proteínas , Proteínas Recombinantes/metabolismo , Proteínas Recombinantes/farmacologia
7.
Protein Eng ; 6(2): 157-65, 1993 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-8475042

RESUMO

Cutinases are extracellular enzymes involved in the disruption of cutine, an insoluble polyester which covers the surface of plants. They belong to a class of serine esterases that are able to hydrolyse fatty acid esters and emulsified triglycerides as efficiently as lipases, but without displaying interfacial activation. Classical crystallographic methods for obtaining heavy-atom derivatives failed, so the cutinase structure has been solved exclusively by the multiple isomorphous replacement method using four Hg derivatives obtained from mutants S4C, S92C, S120C and S129C. Two of these derivatives behaved as expected: (i) the cys mutant of the catalytic Ser S120C, located at the surface of the active site pocket, leads to a good derivative; and (ii) the Hg atom of the derivative obtained with the S92C mutant is completely accessible to the solvent and occupies two alternative positions--consequently a poor derivative results. In contrast, two mutants show an unexpected behaviour: (i) the Hg atom in the S129C mutant was completely buried 10 A below the protein surface and yielded the best derivative; and (ii) a poor quality derivative was obtained with the S4C mutant. Cys 4 belongs to the disordered propeptide 1-16. The Cys 4 bound Hg atom is located in front of the Asp58 side chain, but neither Cys4 nor parts of the propeptide are clearly visible in the electron density maps of the derivative structure.


Assuntos
Hidrolases de Éster Carboxílico/genética , Cisteína , Proteínas Fúngicas/genética , Fusarium/enzimologia , Mutagênese Sítio-Dirigida , Conformação Proteica , Proteínas Recombinantes de Fusão/química , Sítios de Ligação , Hidrolases de Éster Carboxílico/química , Cristalização , DNA/genética , Proteínas Fúngicas/química , Fusarium/genética , Modelos Moleculares , Compostos Organomercúricos/metabolismo , Difração de Raios X
8.
Biochemistry ; 31(24): 5459-66, 1992 Jun 23.
Artigo em Inglês | MEDLINE | ID: mdl-1610792

RESUMO

Site-directed mutagenesis in the active site of xylose isomerase derived from Actinoplanes missouriensis is used to investigate the structural and functional role of specific residues. The mutagenesis work together with the crystallographic studies presented in detail in two accompanying papers adds significantly to the understanding of the catalytic mechanism of this enzyme. Changes caused by introduced mutations emphasize the correlation between substrate specificity and cation preference. Mutations in both His 220 and His 54 mainly affect the catalytic rate constant, with catalysis being severely reduced but not abolished, suggesting that both histidines are important, but not essential, for catalysis. Our results thus challenge the hypothesis that His 54 acts as an obligatory catalytic base for ring opening; this residue appears instead to be implicated in governing the anomeric specificity. With none of the active site histidines acting as a catalytic base, the role of the cations in catalyzing proton transfer is confirmed. In addition, Lys 183 appears to play a crucial part in the isomerization step, by assisting the proton shuttle. Other residues also are important but to a lesser extent. The conserved Lys 294 is indirectly involved in binding the activating cations. Among the active site aromatic residues, the tryptophans (16 and 137) play a role in maintaining the general architecture of the substrate binding site while the role of Phe 26 seems to be purely structural.


Assuntos
Actinomycetales/enzimologia , Aldose-Cetose Isomerases , Carboidratos Epimerases/genética , Sítios de Ligação , Carboidratos Epimerases/química , Carboidratos Epimerases/metabolismo , Catálise , Engenharia Genética , Histidina/química , Cinética , Lisina/química , Estrutura Molecular , Mutagênese Sítio-Dirigida , Fenilalanina/química , Relação Estrutura-Atividade , Especificidade por Substrato , Triptofano/química , Xilose/metabolismo
9.
Biochemistry ; 31(8): 2239-53, 1992 Mar 03.
Artigo em Inglês | MEDLINE | ID: mdl-1540579

RESUMO

Site-specific substitutions of arginine for lysine in the thermostable D-xylose isomerase (XI) from Actinoplanes missouriensis are shown to impart significant heat stability enhancement in the presence of sugar substrates most probably by interfering with nonenzymatic glycation. The same substitutions are also found to increase heat stability in the absence of any sugar derivatives, where a mechanism based on prevention of glycation can no longer be invoked. This rather conservative substitution is moreover shown to improve thermostability in two other structurally unrelated proteins, human copper, zinc-superoxide dismutase (CuZnSOD) and D-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from Bacillus subtilis. The stabilizing effect of Lys----Arg substitutions is rationalized on the basis of a detailed analysis of the crystal structures of wild-type XI and of engineered variants with Lys----Arg substitution at four distinct locations, residues 253, 309, 319, and 323. Molecular model building analysis of the structures of wild-type and mutant CuZnSOD (K9R) and GAPDH (G281K and G281R) is used to explain the observed stability enhancement in these proteins. In addition to demonstrating that even thermostable proteins can lend themselves to further stability improvement, our findings provide direct evidence that arginine residues are important stabilizing elements in proteins. Moreover, the stabilizing role of electrostatic interactions, particularly between subunits in oligomeric proteins, is documented.


Assuntos
Aldose-Cetose Isomerases , Arginina/química , Estabilidade Enzimática , Arginina/genética , Carboidratos Epimerases/química , Carboidratos Epimerases/genética , Clonagem Molecular , Ativação Enzimática , Gliceraldeído-3-Fosfato Desidrogenases/química , Gliceraldeído-3-Fosfato Desidrogenases/genética , Glicosilação , Temperatura Alta , Humanos , Lisina/química , Lisina/genética , Mutagênese Sítio-Dirigida , Conformação Proteica , Engenharia de Proteínas/métodos , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Superóxido Dismutase/química , Superóxido Dismutase/genética , Difração de Raios X
10.
Eur J Biochem ; 203(3): 551-5, 1992 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-1735439

RESUMO

Ribonuclease T1 contains a subsite which by interacting with the leaving nucleoside N of GpN dinucleoside phosphate substrates, contributes to catalysis [Steyaert, J., Wyns, L. & Stanssens, P. (1991) Biochemistry 30, 8661-8665]. The Asn36Ala and Asn98Ala mutations reduce the transesterification rates of GpA, GpC and GpU considerably whereas they have virtually no effect on the transesterification kinetics of the synthetic substrate guanosine 3'-(methyl phosphate) (GpMe) (in which the leaving nucleoside is replaced by methanol), indicating that the Asn36 and Asn98 side chains are part of the RNase T1 subsite [Steyaert, J., Haikal, A. F., Wyns, L. & Stanssens, P. (1991) Biochemistry 30, 8666-8670]. The kinetics of the Asn36Ala, Asn98Ala and wild-type catalyzed transesterification of guanosine 3'-(5'-D-ribosyl phosphate) (GpRib), another GpN analog in which the leaving groups is replaced by D-ribose, enables the mapping of the subsite interactions provided by Asn36 and Asn98. We find that the Asn36 amide function contributes 4.6 kJ/mol to catalysis through interactions with the ribose moiety of the leaving nucleoside. Asn98 is at least in part responsible for the subsite preference for cytidine; the Asn98 side chain preferentially binds cytosine as the leaving nucleoside base.


Assuntos
Alanina/genética , Asparagina/genética , Fosfatos de Dinucleosídeos/metabolismo , Ribonuclease T1/metabolismo , Metabolismo Energético , Ésteres/metabolismo , Cinética , Ribonuclease T1/genética
11.
Biochemistry ; 31(3): 725-32, 1992 Jan 28.
Artigo em Inglês | MEDLINE | ID: mdl-1731929

RESUMO

For 30 years, the prevailing view has been that the hydrophobic effect contributes considerably more than hydrogen bonding to the conformational stability of globular proteins. The results and reasoning presented here suggest that hydrogen bonding and the hydrophobic effect make comparable contributions to the conformational stability of ribonuclease T1 (RNase T1). When RNase T1 folds, 86 intramolecular hydrogen bonds with an average length of 2.95 A are formed. Twelve mutants of RNase T1 [Tyr----Phe (5), Ser----Ala (3), and Asn----Ala (4)] have been prepared that remove 17 of the hydrogen bonds with an average length of 2.93 A. On the basis of urea and thermal unfolding studies of these mutants, the average decrease in conformational stability due to hydrogen bonding is 1.3 kcal/mol per hydrogen bond. This estimate is in good agreement with results from several related systems. Thus, we estimate that hydrogen bonding contributes about 110 kcal/mol to the conformational stability of RNase T1 and that this is comparable to the contribution of the hydrophobic effect. Accepting the idea that intramolecular hydrogen bonds contribute 1.3 +/- 0.6 kcal/mol to the stability of systems in an aqueous environment makes it easier to understand the stability of the "molten globule" states of proteins, and the alpha-helical conformations of small peptides.


Assuntos
Ribonuclease T1/química , Sequência de Aminoácidos , Calorimetria , Estabilidade Enzimática , Escherichia coli/genética , Ligação de Hidrogênio , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Conformação Proteica , Desnaturação Proteica , Ribonuclease T1/genética , Termodinâmica
12.
Biochemistry ; 30(35): 8666-70, 1991 Sep 03.
Artigo em Inglês | MEDLINE | ID: mdl-1653603

RESUMO

We previously presented evidence that ribonuclease T1 (RNase T1; EC 3.1.27.3) contains a subsite that, by interacting with the leaving nucleoside N of GpN dinucleoside phosphate substrates, contributes to catalysis. The kcat values for transphosphorylation follow the order GpC greater than GpA greater than GpU whereas the equilibrium dissociation constants for these substrates are very similar [Steyaert, J., Wyns, L., & Stanssens, P. (1991) Biochemistry (preceding paper in this issue)]. Consistent with this notion, we find that the rate of transesterification of the synthetic substrate GpMe, in which the leaving nucleoside is replaced by a methanol group, is at least 3 orders of magnitude lower than that of GpN substrates. The enzyme's affinity for GpMe is very similar to that for the various GpN substrates, indicating that the apparent contribution of the leaving nucleoside to ground-state binding is minimal. To identify the side chains that belong to the RNase T1 subsite, we searched for amino acid substitutions that differentially affect the transesterification kinetics of GpNs versus GpMe. The Asn36Ala, Tyr38Phe, His92Gln, and Asn98Ala mutants have been analyzed. Of these, the Asn36Ala and Asn98Ala substitutions reduce the transphosphorylation rate of the different GpNs considerably whereas they have virtually no effect on the rate of GpMe transphosphorylation. This observation shows that the Asn36 and Asn98 amide functions are part of the RNase T1 subsite. The sum of the contributions of the two residues accounts quite precisely for the differences in turnover rates among GpC, GpA, and GpU.


Assuntos
Asparagina/química , Fosfatos de Dinucleosídeos/química , Ribonuclease T1/química , Sequência de Aminoácidos , Composição de Bases , Sítios de Ligação , Esterificação , Guanosina Monofosfato/química , Cinética , Conformação Proteica , Especificidade por Substrato
13.
Biochemistry ; 30(35): 8661-5, 1991 Sep 03.
Artigo em Inglês | MEDLINE | ID: mdl-1909570

RESUMO

We report on the effect of the viscogenic agents glycerol and ficoll on the RNase T1 catalyzed turnover of GpA, GpC, GpU, and Torula yeast RNA. For wild-type enzyme, we find that the kcat/Km values for the transesterification of GpC and GpA as well as for the cleavage of RNA are inversely proportional to the relative viscosity of glycerol-containing buffers; no such effect is observed for the conversion of GpU to cGMP and U. The second-order rate constants for His40Ala and Glu46Ala RNase T1, two mutants with a drastically reduced kcat/km ratio, are independent of the microviscosity, indicating that glycerol does not affect the intrinsic kinetic parameters. Consistent with the notion that molecular diffusion rates are unaffected by polymeric viscogens, addition of ficoll has no effect on the kcat/Km for GpC transesterification by wild-type enzyme. The data indicate that the second-order rate constants for GpC, GpA, and Torula yeast RNA are at least partly limited by the diffusion-controlled association rate of substrate and active site; RNase T1 obeys Briggs-Haldane kinetics for these substrates (Km greater than Ks). Calculations suggest that the equilibrium dissociation constants (Ks) for the various GpN-wild-type enzyme complexes are virtually independent of N whereas the measured kcat values follow the order GpC greater than GpA greater than GpU. This is also revealed by the steady-state kinetic parameters of Tyr38Phe and His40Ala RNase T1, two mutants that follow simple Michaelis-Menten kinetics because of a dramatically reduced kcat value (i.e., Km = Ks).(ABSTRACT TRUNCATED AT 250 WORDS)


Assuntos
Fosfatos de Dinucleosídeos/química , Ribonuclease T1/química , Composição de Bases , Sítios de Ligação , Catálise , Esterificação , Cinética , RNA Fúngico/metabolismo , Especificidade por Substrato , Viscosidade
14.
Biotechnology (N Y) ; 9(8): 738-42, 1991 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-1367634

RESUMO

We have engineered recombinant glucose isomerase (GI) from Actinoplanes missouriensis by site-directed mutagenesis to enhance its thermal stability in both the soluble and immobilized forms. Substitution of arginine for lysine at position 253, which lies at the dimer/dimer interface of the GI tetramer, produced the largest stabilization under model industrial conditions. We discuss our results in terms of a model in which chemical glycation of lysines by sugars in the industrial corn syrup substrate represents a major pathway of destabilization.


Assuntos
Aldose-Cetose Isomerases , Carboidratos Epimerases/química , Carboidratos Epimerases/genética , Clonagem Molecular , Enzimas Imobilizadas , Escherichia coli/genética , Bactérias Gram-Positivas/enzimologia , Bactérias Gram-Positivas/genética , Concentração de Íons de Hidrogênio , Modelos Moleculares , Mutagênese , Engenharia de Proteínas , Soluções , Termodinâmica
15.
Biochemistry ; 30(2): 494-9, 1991 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-1899029

RESUMO

In the crystal structure of the ribonuclease T1 (RNase T1; EC 3.1.27.3)-2'-GMP complex the hydrogen-bonding potential of the guanine base is saturated [Arni, R., Heinemann, U., Tokuoka, R., & Saenger, W. (1988) J. Biol. Chem. 263, 15358-15368]. The oxygens of the Glu46 carboxylate and the Asn98 main-chain carbonyl act as hydrogen-bond acceptors for the N(1)H-C(2)-N(2)H2 part of the base. We measured the transesterification kinetics of wild-type and Glu46Ala RNase T1 using the GpU, IpU, and XpU series of analogous substrates. We found that the N(1)H---Glu46 O epsilon 1, the N(2)H---Glu46 O epsilon 2, and the N(2)H---Asn98 O hydrogen bonds have an apparent contribution of 2.7, 1.1, and 1.2 kcal/mol to the interaction energy of the enzyme and the transition state of the substrate. Wild-type RNase T1 discriminates guanine from nonionized xanthine (a guanine analogue in which the exocyclic amino group is replaced by an oxygen) by about 4.4 kcal/mol. Loss of the specific hydrogen bonds with the exocyclic amino group of the guanine base accounts for 2.4 kcal/mol of this discrimination energy; 2.0 kcal/mol is due to unfavorable non-H-bonded oxygen-oxygen contacts in the enzyme-xanthine complex. A pH dependence study shows that the deprotonated form of xanthine (i.e., the 6-keto-2-enolate anion; pKa = 5.4) is far less preferred, if not excluded, as substrate by wild-type RNase T1; this may be attributed to an electrostatic repulsion of the negatively charged xanthine by the Glu46 carboxylate group.


Assuntos
Ribonuclease T1/metabolismo , Asparagina , Aspergillus oryzae/enzimologia , Sítios de Ligação , Análise Mutacional de DNA , Glutamatos , Guanina/metabolismo , Guanosina/metabolismo , Ligação de Hidrogênio , Hipoxantina , Hipoxantinas/metabolismo , Cinética , Oligonucleotídeos/metabolismo , Proteínas Recombinantes/metabolismo , Ribonuclease T1/genética , Especificidade por Substrato , Xantina , Xantinas/metabolismo
16.
Biochemistry ; 29(38): 9064-72, 1990 Sep 25.
Artigo em Inglês | MEDLINE | ID: mdl-1980211

RESUMO

Mechanisms for the ribonuclease T1 (RNase T1; EC 3.1.27.3) catalyzed transesterification reaction generally include the proposal that Glu58 and His92 provide general base and general acid assistance, respectively [Heinemann, U., & Saenger, W. (1982) Nature (London) 299, 27-31]. This view was recently challenged by the observation that mutants substituted at position 58 retain high residual activity; a revised mechanism was proposed in which His40, and not Glu58, is engaged in catalysis as general base [Nishikawa, S., Morioka, H., Kim, H., Fuchimura, K., Tanaka, T., Uesugi, S., Hakoshima, T., Tomita, K., Ohtsuka, E., & Ikehara, M. (1987) Biochemistry 26, 8620-8624]. To clarify the functional roles of His40, Glu58, and His92, we analyzed the consequences of several amino acid substitutions (His40Ala, His40Lys, His40Asp, Glu58Ala, Glu58Gln, and His92Gln) on the kinetics of GpC transesterification. The dominant effect of all mutations is on Kcat, implicating His40, Glu58, and His92 in catalysis rather than in substrate binding. Plots of log (Kcat/Km) vs pH for wild-type, His40Lys, and Glu58Ala RNase T1, together with the NMR-determined pKa values of the histidines of these enzymes, strongly support the view that Glu58-His92 acts as the base-acid couple. The curves also show that His40 is required in its protonated form for optimal activity of wild-type enzyme. We propose that the charged His40 participates in electrostatic stabilization of the transition state; the magnitude of the catalytic defect (a factor of 2000) from the His40 to Ala replacement suggests that electrostatic catalysis contributes considerably to the overall rate acceleration. For Glu58Ala RNase T1, the pH dependence of the catalytic parameters suggests an altered mechanism in which His40 and His92 act as base and acid catalyst, respectively. The ability of His40 to adopt the function of general base must account for the significant activity remaining in Glu58-mutated enzymes.


Assuntos
Alanina , Aminoácidos/genética , Escherichia coli/genética , Exorribonucleases/genética , Glutamatos , Histidina , Mutação , Alanina/genética , Catálise , Escherichia coli/enzimologia , Esterificação , Glutamatos/genética , Ácido Glutâmico , Histidina/genética , Concentração de Íons de Hidrogênio , Cinética , Espectroscopia de Ressonância Magnética
17.
J Biol Chem ; 264(20): 11621-5, 1989 Jul 15.
Artigo em Inglês | MEDLINE | ID: mdl-2663837

RESUMO

Ribonuclease T1 (RNase T1) and mutants Gln25----Lys, Glu58----Ala, and the double mutant were prepared from a chemically synthesized gene, cloned and expressed in Escherichia coli. The wild-type RNase T1 prepared from the cloned gene was identical in every functional and physical property examined to RNase T1 prepared from Aspergillus oryzae. Urea and thermal unfolding experiments show that Gln25----Lys is 0.9 kcal/mol more stable and Glu58----Ala is 0.8 kcal/mol less stable than wild-type RNase T1. In the double mutant, these contributions cancel and the stability does not differ significantly from that of wild-type RNase T1. For the double mutant, the dependence of delta G on urea concentration is significantly greater than for wild-type RNase T1 or the single mutants. This suggests that the double mutant unfolds more completely in urea than the other proteins. The activity of Gln25----Lys is identical with that of wild-type RNase T1. The activities of Glu58----Ala and the double mutant are 7% of wild-type when GpC hydrolysis is measured (due to a 35-fold decrease in kcat), and 37% of wild-type when RNA hydrolysis is measured. Thus, Glu58 is important, but not essential to the activity of RNase T1.


Assuntos
Exorribonucleases/genética , Mutação , Aspergillus oryzae/enzimologia , Eletroforese em Gel de Poliacrilamida , Escherichia coli/genética , Regulação da Expressão Gênica , Hidrólise , Cinética , Conformação Proteica
18.
Nucleic Acids Res ; 17(12): 4441-54, 1989 Jun 26.
Artigo em Inglês | MEDLINE | ID: mdl-2501754

RESUMO

An efficient method for the construction of multiple mutations in a sequential manner is described. It is based on the gapped duplex DNA approach to oligonucleotide-directed mutagenesis (Kramer et al. 1984, Nucl. Acids Res. 12, 9441-9456) and a set of newly constructed phasmid vectors. These are characterized by the following features. Presence of the phage fl replication origin permits ready conversion to the single stranded DNA form. An amber mutation within, alternatively, the bla or cat gene provides a means for ready selection of the strand into which the mutagenic oligonucleotide has been incorporated. By means of the alternating antibiotic resistance markers any number of mutations can be constructed in consecutive rounds of mutagenesis. The optional presence of gene expression signals allows the direct overproduction of structurally altered proteins without re-cloning. Both the mutagenesis and expression aspects were tested using the lacZ gene as a model.


Assuntos
Marcadores Genéticos , Vetores Genéticos , Mutação , Ácidos Nucleicos Heteroduplexes , Sondas de Oligonucleotídeos , Escherichia coli/enzimologia , Escherichia coli/genética , Regulação da Expressão Gênica , Genes Bacterianos , Óperon Lac , Sondas de Oligonucleotídeos/síntese química , beta-Galactosidase/síntese química , beta-Galactosidase/genética
19.
Plasmid ; 21(1): 9-20, 1989 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-2727147

RESUMO

Two plasmids, pLAB1000 and pLAB2000 (3.3 and 9.1 kb, respectively), have been isolated from a grass silage strain of Lactobacillus hilgardii. Both plasmids were cloned in Escherichia coli and characterized through restriction mapping. A 1.6-kb XbaI-SacI fragment of pLAB1000 appeared to be sufficient for autonomous replication in Lactobacillus plantarum and in Bacillus subtilis. Different shuttle vectors for E. coli and gram-positive bacteria were developed using the pLAB1000 plasmid. These could stably be maintained in Lactobacillus, Enterococcus, and Bacillus under selective conditions. Plasmids sharing DNA homologies with pLAB1000 have been observed in different strains of the related species L. plantarum.


Assuntos
Bactérias Gram-Positivas/genética , Lactobacillus/genética , Plasmídeos , DNA Bacteriano/genética , DNA Bacteriano/isolamento & purificação , Replicon , Mapeamento por Restrição , Especificidade da Espécie , Transformação Bacteriana
20.
Eur J Biochem ; 173(3): 617-22, 1988 May 02.
Artigo em Inglês | MEDLINE | ID: mdl-3131142

RESUMO

The gene for ribonuclease T1 from Aspergillus oryzae has been chemically synthesized using the segmental support technique. An Escherichia coli clone producing the ribonuclease at high levels was constructed by linking the gene downstream to the region coding for the signal peptide of the OmpA protein (a major outer membrane protein of E. coli), using the secretion cloning vector pIN-III-ompA2. This strategy was employed in order to circumvent a possible toxic effect of the gene product on the host cell. Active ribonuclease containing four additional amino acids at the N-terminus could be isolated from the periplasmic fraction of the host. The final yield after purification was 20 mg enzyme/l liquid culture. With respect to immunological, catalytic and specific behaviour, no qualitative differences could be detected between the enzyme from the over-producing E. coli strain and ribonuclease T1 isolated from A. oryzae.


Assuntos
Clonagem Molecular , Endorribonucleases/biossíntese , Escherichia coli/genética , Genes Bacterianos , Vetores Genéticos , Ribonuclease T1/biossíntese , Aspergillus/enzimologia , Aspergillus/genética , Eletroforese em Gel de Poliacrilamida , Escherichia coli/enzimologia , Escherichia coli/metabolismo , Regulação da Expressão Gênica , Regiões Promotoras Genéticas , Sinais Direcionadores de Proteínas , Ribonuclease T1/genética , Relação Estrutura-Atividade
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